PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G056700.1
Common NamePOPTR_0013s05330g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 271aa    MW: 30310.5 Da    PI: 5.6842
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G056700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-183685255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr++  +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Potri.013G056700.1 36 KFVGVRQRT-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 85
                        799***999.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-273693IPR001471AP2/ERF domain
PROSITE profilePS5103219.1113693IPR001471AP2/ERF domain
PfamPF008473.3E-123685IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-193693IPR016177DNA-binding domain
SMARTSM003802.3E-343699IPR001471AP2/ERF domain
CDDcd000183.55E-303692No hitNo description
PRINTSPR003673.2E-73748IPR001471AP2/ERF domain
PRINTSPR003673.2E-75975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEIHFQQQKQ HKNASIPVSK ASKFKGRGRP NSNSNKFVGV RQRTSGRWVA EIKDTTQKIR  60
MWLGTFETAE EAARAYDEAA CLLRGSNTRT NFITHVSVDS PLASRIRNLL NNKRRDQQQH  120
SEEETAEAST PPTSTITTTS STITTSSSSS SSSGMSDNYS SSIHETDHLF DDAYKPDLRN  180
CIEEFKLGSS QSDLSRGFGP LFDRFSYAQE VLDFPKSVVL PEAGDSEFSE FDRMKVERQI  240
SASLYAINGV QEYMEAVYDP IEALWDLPPL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319156.20.0hypothetical protein POPTR_0013s05330g
TrEMBLB9I5W80.0B9I5W8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-28related to AP2 11